PUBLICATIONS

A. M. Luescher, W. J. Stark, and R. N. Grass, “DNA-Based Chemical Unclonable Functions for Cryptographic Anticounterfeit Tagging of Pharmaceuticals,” ACS Nano, p. acsnano.4c10870, Oct. 2024, doi: 10.1021/acsnano.4c10870. Available: https://pubs.acs.org/doi/10.1021/acsnano.4c10870

O. Sabary, I. Preuss, R. Gabrys, Z. Yakhini, L. Anavy, and E. Yaakobi, “Error-Correcting Codes for Combinatorial Composite DNA,” in 2024 IEEE International Symposium on Information Theory (ISIT), Athens, Greece: IEEE, Jul. 2024, pp. 109–114. doi: 10.1109/ISIT57864.2024.10619334. Available: https://arxiv.org/abs/2401.15666

F. Walter, O. Sabary, A. Wachter-Zeh, and E. Yaakobi, “Coding for Composite DNA to Correct Substitutions, Strand Losses, and Deletions,” in 2024 IEEE International Symposium on Information Theory (ISIT), Athens, Greece: IEEE, Jul. 2024, pp. 97–102. doi: 10.1109/ISIT57864.2024.10619202. Available: https://arxiv.org/abs/2404.12868

S. Singhvi, R. Con, H. M. Kiah, and E. Yaakobi, “An Optimal Sequence Reconstruction Algorithm for Reed-Solomon Codes,” in 2024 IEEE International Symposium on Information Theory (ISIT), Athens, Greece: IEEE, Jul. 2024, pp. 2832–2837. doi: 10.1109/ISIT57864.2024.10619163. Available: https://arxiv.org/abs/2403.07754

D. Bar-Lev, T. Etzion, E. Yaakobi, and Z. Yakhini, “Representing Information on DNA Using Patterns Induced by Enzymatic Labeling,” in 2024 IEEE International Symposium on Information Theory (ISIT), Athens, Greece: IEEE, Jul. 2024, pp. 1943–1948. doi: 10.1109/ISIT57864.2024.10619227. Available: https://arxiv.org/pdf/2405.08475

A. Banerjee, Y. Yehezkeally, A. Wachter-Zeh, and E. Yaakobi, “Correcting a Single Deletion in Reads from a Nanopore Sequencer,” in 2024 IEEE International Symposium on Information Theory (ISIT), Athens, Greece: IEEE, Jul. 2024, pp. 103–108. doi: 10.1109/ISIT57864.2024.10619468. Available: https://arxiv.org/abs/2401.15939

A. Banerjee, Y. Yehezkeally, A. Wachter-Zeh, and E. Yaakobi, “Error-Correcting Codes for Nanopore Sequencing,” IEEE Transactions on Information Theory, vol. 70, no. 7, pp. 4956–4967, Jul. 2024, doi: 10.1109/TIT.2024.3380615. Available: https://ieeexplore.ieee.org/document/10478160

I. Preuss, B. Galili, Z. Yakhini, and L. Anavy, “Sequencing Coverage Analysis for Combinatorial DNA-Based Storage Systems,” IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, vol. 10, no. 2, pp. 297–316, Jun. 2024, doi: 10.1109/TMBMC.2024.3408053. Available: https://ieeexplore.ieee.org/document/10543138

I. Preuss, M. Rosenberg, Z. Yakhini, and L. Anavy, “Efficient DNA-based data storage using shortmer combinatorial encoding,” Sci Rep, vol. 14, no. 1, p. 7731, Apr. 2024, doi: 10.1038/s41598-024-58386-z. Available: https://www.nature.com/articles/s41598-024-58386-z

J. Behr et al., “An open-source advanced maskless synthesizer for light-directed chemical synthesis of large nucleic acid libraries and microarrays.” ChemRxiv, Feb. 22, 2024. doi: 10.26434/chemrxiv-2024-j4c90. Available: https://chemrxiv.org/engage/chemrxiv/article-details/65ba15e39138d231611ab534

A. L. Gimpel, W. J. Stark, R. Heckel, and R. N. Grass, “Challenges for error-correction coding in DNA data storage: photolithographic synthesis and DNA decay,” Digital Discovery, p. 10.1039.D4DD00220B, 2024, doi: 10.1039/D4DD00220B. Available: https://xlink.rsc.org/?DOI=D4DD00220B

S. Gantenbein et al., “Three-dimensional printing of mycelium hydrogels into living complex materials,” Nat. Mater., vol. 22, no. 1, pp. 128–134, Jan. 2023, doi: 10.1038/s41563-022-01429-5. Available: https://www.nature.com/articles/s41563-022-01429-5

N. Kleger et al., “Light-Based Printing of Leachable Salt Molds for Facile Shaping of Complex Structures,” Advanced Materials, vol. 34, no. 32, p. 2203878, 2022, doi: 10.1002/adma.202203878. Available: https://onlinelibrary.wiley.com/doi/abs/10.1002/adma.202203878

X. Chen, S. K. Ammu, K. Masania, P. G. Steeneken, and F. Alijani, “Diamagnetic Composites for High-Q Levitating Resonators,” Advanced Science, vol. 9, no. 32, p. 2203619, 2022, doi: 10.1002/advs.202203619. Available: https://onlinelibrary.wiley.com/doi/abs/10.1002/advs.202203619

R. Shafir, O. Sabary, L. Anavy, E. Yaakobi, and Z. Yakhini, “Sequence Reconstruction Under Stutter Noise in Enzymatic DNA Synthesis,” in 2021 IEEE Information Theory Workshop (ITW), Oct. 2021, pp. 1–6. doi: 10.1109/ITW48936.2021.9611362. Available: https://ieeexplore.ieee.org/document/9611362

J. Lietard, A. Leger, Y. Erlich, N. Sadowski, W. Timp, and M. M. Somoza, “Chemical and photochemical error rates in light-directed synthesis of complex DNA libraries,” Nucleic Acids Research, vol. 49, no. 12, p. 6687, Jul. 2021, doi: 10.1093/nar/gkab505. Available: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8266620/

I. Amit et al., “CRISPECTOR provides accurate estimation of genome editing translocation and off-target activity from comparative NGS data,” Nat Commun, vol. 12, no. 1, p. 3042, May 2021, doi: 10.1038/s41467-021-22417-4. Available: https://www.nature.com/articles/s41467-021-22417-4

O. Sabary, Y. Orlev, R. Shafir, L. Anavy, E. Yaakobi, and Z. Yakhini, “SOLQC: Synthetic Oligo Library Quality Control tool,” Bioinformatics, vol. 37, no. 5, pp. 720–722, Mar. 2021, doi: 10.1093/bioinformatics/btaa740. Available: https://doi.org/10.1093/bioinformatics/btaa740

M. Schreck et al., “3D Printed Scaffolds for Monolithic Aerogel Photocatalysts with Complex Geometries,” Small, vol. 17, no. 50, p. 2104089, 2021, doi: 10.1002/smll.202104089. Available: https://onlinelibrary.wiley.com/doi/abs/10.1002/smll.202104089

L. C. Meiser, J. Koch, P. L. Antkowiak, W. J. Stark, R. Heckel, and R. N. Grass, “DNA synthesis for true random number generation,” Nat Commun, vol. 11, no. 1, p. 5869, Nov. 2020, doi: 10.1038/s41467-020-19757-y. Available: https://www.nature.com/articles/s41467-020-19757-y

P. L. Antkowiak et al., “Low cost DNA data storage using photolithographic synthesis and advanced information reconstruction and error correction,” Nat Commun, vol. 11, no. 1, p. 5345, Oct. 2020, doi: 10.1038/s41467-020-19148-3. Available: https://www.nature.com/articles/s41467-020-19148-3

A. Lenz, Y. Liu, C. Rashtchian, P. H. Siegel, A. Wachter-Zeh, and E. Yaakobi, “Coding for Efficient DNA Synthesis,” in 2020 IEEE International Symposium on Information Theory (ISIT), Jun. 2020, pp. 2885–2890. doi: 10.1109/ISIT44484.2020.9174272. Available: https://ieeexplore.ieee.org/document/9174272

A. Lenz, P. H. Siegel, A. Wachter-Zeh, and E. Yaakobi, “Coding Over Sets for DNA Storage,” IEEE Transactions on Information Theory, vol. 66, no. 4, pp. 2331–2351, Apr. 2020, doi: 10.1109/TIT.2019.2961265. Available: https://ieeexplore.ieee.org/abstract/document/8937735

J. Koch, S. Gantenbein, K. Masania, W. J. Stark, Y. Erlich, and R. N. Grass, “A DNA-of-things storage architecture to create materials with embedded memory,” Nat Biotechnol, vol. 38, no. 1, pp. 39–43, Jan. 2020, doi: 10.1038/s41587-019-0356-z. Available: https://www.nature.com/articles/s41587-019-0356-z

L. Anavy, I. Vaknin, O. Atar, R. Amit, and Z. Yakhini, “Data storage in DNA with fewer synthesis cycles using composite DNA letters,” Nat Biotechnol, vol. 37, no. 10, pp. 1229–1236, Oct. 2019, doi: 10.1038/s41587-019-0240-x. Available: https://www.nature.com/articles/s41587-019-0240-x

K. Hölz, E. Schaudy, J. Lietard, and M. M. Somoza, “Multi-level patterning nucleic acid photolithography,” Nat Commun, vol. 10, no. 1, p. 3805, Aug. 2019, doi: 10.1038/s41467-019-11670-3. Available: https://www.nature.com/articles/s41467-019-11670-3

R. Heckel, G. Mikutis, and R. N. Grass, “A Characterization of the DNA Data Storage Channel,” Sci Rep, vol. 9, no. 1, p. 9663, Jul. 2019, doi: 10.1038/s41598-019-45832-6. Available: https://www.nature.com/articles/s41598-019-45832-6

R. Heckel, I. Shomorony, K. Ramchandran, and D. N. C. Tse, “Fundamental limits of DNA storage systems,” in 2017 IEEE International Symposium on Information Theory (ISIT), Jun. 2017, pp. 3130–3134. doi: 10.1109/ISIT.2017.8007106. Available: https://ieeexplore.ieee.org/abstract/document/8007106

M. Sack et al., “Express photolithographic DNA microarray synthesis with optimized chemistry and high-efficiency photolabile groups,” J Nanobiotechnol, vol. 14, no. 1, p. 14, Mar. 2016, doi: 10.1186/s12951-016-0166-0. Available: https://doi.org/10.1186/s12951-016-0166-0

R. N. Grass, R. Heckel, M. Puddu, D. Paunescu, and W. J. Stark, “Robust chemical preservation of digital information on DNA in silica with error-correcting codes,” Angew Chem Int Ed Engl, vol. 54, no. 8, pp. 2552–2555, Feb. 2015, doi: 10.1002/anie.201411378. Available: https://onlinelibrary.wiley.com/doi/10.1002/anie.201411378

N. Kretschy, A.-K. Holik, V. Somoza, K.-P. Stengele, and M. M. Somoza, “Next-Generation o-Nitrobenzyl Photolabile Groups for Light-Directed Chemistry and Microarray Synthesis,” Angewandte Chemie International Edition, vol. 54, no. 29, pp. 8555–8559, 2015, doi: 10.1002/anie.201502125. Available: https://onlinelibrary.wiley.com/doi/abs/10.1002/anie.201502125

D. Paunescu, M. Puddu, J. O. B. Soellner, P. R. Stoessel, and R. N. Grass, “Reversible DNA encapsulation in silica to produce ROS-resistant and heat-resistant synthetic DNA ‘fossils,’” Nat Protoc, vol. 8, no. 12, pp. 2440–2448, Dec. 2013, doi: 10.1038/nprot.2013.154. Available: https://www.nature.com/articles/nprot.2013.154